As the complexity of synthetic genetic circuits increases, modeling is becoming a necessary first step to inform subsequent experimental efforts. In recent years, the design automation community has developed a wealth of computational tools for …
The simulation of biological systems prior to their physical implementation can save time, money, and potentially provide insights into alternate designs. This paper presents a simulation environment which allows for a visual design process …
The iBioSim tool is being developed to facilitate the construction and simulation of synthetic genetic circuits. In this project, we have created a user interface that is similar to those used to construct schematic diagrams which are familiar to …
This paper presents the bachelor’s thesis of Curtis Kendall Madsen which can be broken down into the following three goals. The first goal of this project is to develop a way to convert genetic networks into logical models. Once this is done, finding …